PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g18971.1.p
Common NameBRADI_3g18971, LOC100825007
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 161aa    MW: 17762 Da    PI: 8.6063
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g18971.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.9e-052951123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C+ C + F++   L  H+++H
  Bradi3g18971.1.p 29 YQCSFCRREFRSAQALGGHMNVH 51
                      9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.14E-62655No hitNo description
Gene3DG3DSA:3.30.160.605.9E-42753IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.3232956IPR007087Zinc finger, C2H2
PfamPF139124.6E-62952IPR007087Zinc finger, C2H2
SMARTSM003550.00392951IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MESRSTREQQ PWSYSCSFPT SFAWPPRSYQ CSFCRREFRS AQALGGHMNV HRRDRARLRH  60
GSPPPPPNPA ASANPNPRWA AAAAAIPNLN YPPPPPMAPP PSLYRPHSRS SKSHERSLSV  120
AAKARELEVE VNLELGVGVG VQCCAEEEDC LDLELRLGYS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-132451229superman protein
2l1o_A4e-132451229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236493.11e-113PREDICTED: transcriptional regulator SUPERMAN-like
SwissprotQ388958e-24SUP_ARATH; Transcriptional regulator SUPERMAN
TrEMBLA0A0Q3F7P31e-113A0A0Q3F7P3_BRADI; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP11460_0012e-31(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.19e-22C2H2 family protein